Yes — the plugin is built exactly for this purpose.
You can combine any of these:

• LearnDash course
• WooCommerce simple product
• WooCommerce variable product
• WooCommerce subscription
• EDD digital download
• All inside one frequently-bought-together section.

Important Note:

WooCommerce and EDD do not work together on the same checkout system.
This means:

• You can create FBT bundles with LearnDash + WooCommerce items, OR
• You can create FBT bundles with LearnDash + EDD items,